PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g03530.1
Common NameLR48_Vigan06g014600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 237aa    MW: 26971.2 Da    PI: 8.4799
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g03530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-1999149255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp+++g   r++lg+f ta eAaka+++a+ +++g
  Vang07g03530.1  99 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFETALEAAKAYDRAAFRFRG 149
                     7********.**********96655..************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-3298158IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2299158IPR016177DNA-binding domain
PfamPF008471.5E-1399149IPR001471AP2/ERF domain
SMARTSM003802.1E-3799163IPR001471AP2/ERF domain
PROSITE profilePS5103224.43499157IPR001471AP2/ERF domain
CDDcd000183.20E-2999157No hitNo description
PRINTSPR003671.7E-13100111IPR001471AP2/ERF domain
PRINTSPR003671.7E-13139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDQFFSDFFD FPTTSTEHQF SRFEIESKPQ IIDHQTPNPH PQTSTSDFTF PNTHDRKKPQ  60
SNRKKSLQIS LPQKTEWIQF GEGEVAGKVV QQAAEEKRHY RGVRQRPWGK FAAEIRDPNK  120
RGSRVWLGTF ETALEAAKAY DRAAFRFRGS KAILNFPLEA GADNRKRQRE EEEPVVEVVK  180
REKVEDFDVT CIRDAPLTPS SWPGFWGSDA NGIFAVPPLS PLSPHPALGY PQLMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3098158464ATERF1
3gcc_A1e-3098158464ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519882.11e-136PREDICTED: ethylene-responsive transcription factor 6-like
SwissprotO803413e-62EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A0L9UPK61e-175A0A0L9UPK6_PHAAN; Uncharacterized protein
STRINGGLYMA11G03900.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.13e-53ethylene responsive element binding factor 6
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]